TMC-GCID Publications

Found 49 results
2022
Piedra F-A, Henke D, Rajan A, Muzny DM, Doddapaneni H, Menon VK, et al.. Modeling nonsegmented negative-strand RNA virus (NNSV) transcription with ejective polymerase collisions and biased diffusion. Front Mol Biosci. 2022 ;9:1095193.
Rajan A, Piedra F-A, Aideyan L, McBride T, Robertson M, Johnson HL, et al.. Multiple Respiratory Syncytial Virus (RSV) Strains Infecting HEp-2 and A549 Cells Reveal Cell Line-Dependent Differences in Resistance to RSV Infection. J Virol. 2022 ;96(7):e0190421.
Chen J, Qiu X, Avadhanula V, Shepard SS, Kim D-K, Hixson J, et al.. Novel and extendable genotyping system for human respiratory syncytial virus based on whole-genome sequence analysis. Influenza Other Respir Viruses. 2022 ;16(3):492-500.
Blutt SE, Estes MK. Organoid Models for Infectious Disease. Annu Rev Med. 2022 ;73:167-182.
Liu Y, Kearney J, Mahmoud M, Kille B, Sedlazeck FJ, Treangen TJ. Rescuing low frequency variants within intra-host viral populations directly from Oxford Nanopore sequencing data. Nat Commun. 2022 ;13(1):1321.
2021
Clark JR, Maresso AM. Comparative Pathogenomics of : Polyvalent Vaccine Target Identification through Virulome Analysis. Infect Immun. 2021 ;89(8):e0011521.
Criss ZK, Bhasin N, Di Rienzi SC, Rajan A, Deans-Fielder K, Swaminathan G, et al.. Drivers of transcriptional variance in human intestinal epithelial organoids. Physiol Genomics. 2021 ;53(11):486-508.
Swaminathan G, Kamyabi N, Carter HE, Rajan A, Karandikar U, Criss ZK, et al.. Effect of substrate stiffness on human intestinal enteroids' infectivity by enteroaggregative Escherichia coli. Acta Biomater. 2021 ;132:245-259.
Olvera A, Carter H, Rajan A, Carlin LG, Yu X, Zeng X-L, et al.. Enteropathogenic Escherichia coli Infection in Cancer and Immunosuppressed Patients. Clin Infect Dis. 2021 ;72(10):e620-e629.
Rajan A, Weaver AMorgan, Aloisio GMarie, Jelinski J, Johnson HL, Venable SF, et al.. The Human Nose Organoid Respiratory Virus Model: an Human Challenge Model To Study Respiratory Syncytial Virus (RSV) and Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Pathogenesis and Evaluate Therapeutics. mBio. 2021 ;13(1):e0351121.
Chen F, Zhang Y, Sucgang R, Ramani S, Corry D, Kheradmand F, et al.. Meta-analysis of host transcriptional responses to SARS-CoV-2 infection reveals their manifestation in human tumors. Sci Rep. 2021 ;11(1):2459.
Wilson RL, Hewes SA, Rajan A, Lin S-C, Bomidi C, Iida T, et al.. A Millifluidic Perfusion Cassette for Studying the Pathogenesis of Enteric Infections Using Ex-Vivo Organoids. Ann Biomed Eng. 2021 ;49(4):1233-1244.
Kondapi DSamantha, Ramani S, Estes MK, Atmar RL, Okhuysen PC. Norovirus in Cancer Patients: A Review. Open Forum Infect Dis. 2021 ;8(6):ofab126.
Doddapaneni H, Cregeen SJavornik, Sucgang R, Meng Q, Qin X, Avadhanula V, et al.. Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals. PLoS One. 2021 ;16(8):e0244468.
Sapoval N, Mahmoud M, Jochum MD, Liu Y, Elworth RALeo, Wang Q, et al.. SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission. Genome Res. 2021 ;31(4):635-644.
Butler D, Mozsary C, Meydan C, Foox J, Rosiene J, Shaiber A, et al.. Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions. Nat Commun. 2021 ;12(1):1660.
Farinholt T, Doddapaneni H, Qin X, Menon V, Meng Q, Metcalf G, et al.. Transmission event of SARS-CoV-2 delta variant reveals multiple vaccine breakthrough infections. BMC Med. 2021 ;19(1):255.
Avadhanula V, Nicholson EG, Ferlic-Stark L, Piedra F-A, Blunck BN, Fragoso S, et al.. Viral Load of Severe Acute Respiratory Syndrome Coronavirus 2 in Adults During the First and Second Wave of Coronavirus Disease 2019 Pandemic in Houston, Texas: The Potential of the Superspreader. J Infect Dis. 2021 ;223(9):1528-1537.
2020
Rajan A, Robertson MJ, Carter HE, Poole NM, Clark JR, Green SI, et al.. Enteroaggregative E. coli Adherence to Human Heparan Sulfate Proteoglycans Drives Segment and Host Specific Responses to Infection. PLoS Pathog. 2020 ;16(9):e1008851.
Wong MC, Cregeen SJJavornik, Ajami NJ, Petrosino JF. Evidence of recombination in coronaviruses implicating pangolin origins of nCoV-2019. bioRxiv. 2020 ;.
Sapoval N, Mahmoud M, Jochum MD, Liu Y, Elworth RALeo, Wang Q, et al.. Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission. bioRxiv. 2020 ;.
Lin S-C, Qu L, Ettayebi K, Crawford SE, Blutt SE, Robertson MJ, et al.. Human norovirus exhibits strain-specific sensitivity to host interferon pathways in human intestinal enteroids. Proc Natl Acad Sci U S A. 2020 ;117(38):23782-23793.
Butler DJ, Mozsary C, Meydan C, Danko D, Foox J, Rosiene J, et al.. Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions. bioRxiv. 2020 ;.
2019
Koestler BJ, Ward CM, Fisher CR, Rajan A, Maresso AW, Payne SM. Human Intestinal Enteroids as a Model System of Pathogenesis. Infect Immun. 2019 ;87(4).