TMC-GCID Publications

Found 63 results
2026
Kaur G, Crawford SE, Cregeen SJavornik, Surathu A, B Ayyar VV, Apostol CV, et al.. Overcoming host restrictions to enable continuous passaging of GII.3 human norovirus in human intestinal enteroids. Sci Adv. 2026. p. eaeb0455.
Kafer LA, Escapa IF, Boyd AI, Tostado ARivera R, Kambal A, Blutt SE, et al.. Streptococcus pneumoniae colonization modulates human nasal epithelial responses to respiratory syncytial virus infection. bioRxiv. 2026.
2025
Boutzoukas AE, Dai W, Cober E, Abbo LM, Komarow L, Chen L, et al.. Carbapenem-resistant Enterobacterales in solid organ transplant recipients. Am J Transplant. 2025 ;25(4):848-859.
De Chiara L, Doughty R, Estévez-Gómez N, Gallego-García P, Alvariño P, Díez-Martín A, et al.. A Comparison of Methods for the Optimal Recovery of the Human Fecal Virome. medRxiv. 2025.
Bhamidipati SV, Surathu A, Chao H, Agustinho DP, Xiang Q, Kottapalli K, et al.. Complete genomic characterization of global pathogens respiratory syntical virus and human norovirus using probe based capture enrichment. Sci Rep. 2025 ;15(1):20526.
Avadhanula V, Agustinho DP, Sahni LC, Surathu A, Henke D, Doddapaneni H, et al.. Evolutionary dynamics of Respiratory Syncytial Virus in pre-pandemic, pandemic, and post-pandemic periods in Houston, Texas, USA. bioRxiv. 2025.
Mahmoud M, Agustinho DP, Sedlazeck FJ. A Hitchhiker's Guide to long-read genomic analysis. Genome Res. 2025 ;35(4):545-558.
Laird TS, Flyangolts K, Bartling C, Gemler BT, Beal J, Mitchell T, et al.. Inter-tool analysis of a NIST dataset for assessing baseline nucleic acid sequence screening. bioRxiv. 2025.
Avadhanula V, Creighton CJ, Ferlic-Stark L, Nagaraj D, Zhang Y, Sucgang R, et al.. Longitudinal host transcriptional responses to SARS-CoV-2 infection in adults with extremely high viral load. PLoS One. 2025 ;20(1):e0317033.
Boyd AI, Kafer LA, Escapa IF, Kambal A, Tariq H, Hilsenbeck SG, et al.. Nasal microbionts differentially colonize and elicit cytokines in human nasal epithelial organoids. bioRxiv. 2025.
Xing Y, Santos HJHernande, Qiu L, Ritter SR, Zulk JJ, Lahowetz R, et al.. Phage-induced protection against lethal bacterial reinfection. Proc Natl Acad Sci U S A. 2025 ;122(22):e2423286122.
Moline HL, Toepfer AP, Tannis A, Weinberg GA, Staat MA, Halasa NB, et al.. Respiratory Syncytial Virus Disease Burden and Nirsevimab Effectiveness in Young Children From 2023-2024. JAMA Pediatr. 2025 ;179(2):179-187.
2024
Lewis MA, Patil K, Ettayebi K, Estes MK, Atmar RL, Ramani S. Divergent responses of human intestinal organoid monolayers using commercial in vitro cytotoxicity assays. PLoS One. 2024 ;19(6):e0304526.
Joshi CS, Salazar AM, Wang C, Ligon MM, Chappidi RR, Fashemi BE, et al.. D-Mannose reduces cellular senescence and NLRP3/GasderminD/IL-1β-driven pyroptotic uroepithelial cell shedding in the murine bladder. Dev Cell. 2024 ;59(1):33-47.e5.
Henke D, Piedra F-A, Avadhanula V, Doddapaneni H, Muzny DM, Menon VK, et al.. Examining intra-host genetic variation of RSV by short read high-throughput sequencing. bioRxiv. 2024 ;.
Adeniyi-Ipadeola GO, Hankins JD, Kambal A, Zeng X-L, Patil K, Poplaski V, et al.. Infant and adult human intestinal enteroids are morphologically and functionally distinct. mBio. 2024 ;15(8):e0131624.
Aloisio GM, Nagaraj D, Murray AM, Schultz EM, McBride T, Aideyan L, et al.. Infant-derived human nasal organoids exhibit relatively increased susceptibility, epithelial responses, and cytotoxicity during RSV infection. J Infect. 2024 ;89(6):106305.
Dylus D, Altenhoff A, Majidian S, Sedlazeck FJ, Dessimoz C. Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree. Nat Biotechnol. 2024 ;42(1):139-147.
Avadhanula V, Agustinho DPaiva, Menon VKumar, Chemaly RF, Shah DP, Qin X, et al.. Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with normal and delayed viral clearance. Virus Evol. 2024 ;10(1):vead086.
Ramani S, Cregeen SJJavornik, Surathu A, Neill FH, Muzny DM, Doddapaneni H, et al.. INTRA- AND INTER-HOST EVOLUTION OF HUMAN NOROVIRUS IN HEALTHY ADULTS. bioRxiv. 2024 ;.
Aloisio GM, Nagaraj D, Murray AM, Schultz EM, McBride T, Aideyan L, et al.. Pediatric human nose organoids demonstrate greater susceptibility, epithelial responses, and cytotoxicity than adults during RSV infection. bioRxiv. 2024 ;.
Xing Y, Clark JR, Chang JD, Zulk JJ, Chirman DM, Piedra F-A, et al.. Progress toward a vaccine for extraintestinal pathogenic (ExPEC) II: efficacy of a toxin-autotransporter dual antigen approach. Infect Immun. 2024 ;92(5):e0044023.
Chappell CL, Hoffman KL, Lorenzi PL, Tan L, Petrosino J, Gibbs R, et al.. Tryptophan Metabolites And Their Predicted Microbial Sources In Fecal Samples From Healthy Individuals. bioRxiv. 2024 ;.
Bomidi C, Zeng X-LL, Poplaski V, Coarfa C, Estes MK, Blutt SE. Using Human Intestinal Organoids to Understand the Small Intestine Epithelium at the Single Cell Transcriptional Level. J Vis Exp. 2024 ;(208).
Qiu L, Chirman D, Clark JR, Xing Y, Santos HHernandez, Vaughan EE, et al.. Vaccines against extraintestinal pathogenic (ExPEC): progress and challenges. Gut Microbes. 2024 ;16(1):2359691.