TMC-GCID Publications

Found 13 results
Filters: Author is Petrosino, Joseph F  [Clear All Filters]
2025
Bhamidipati SV, Surathu A, Chao H, Agustinho DP, Xiang Q, Kottapalli K, et al.. Complete genomic characterization of global pathogens respiratory syntical virus and human norovirus using probe based capture enrichment. Sci Rep. 2025 ;15(1):20526.
Avadhanula V, Agustinho DP, Sahni LC, Surathu A, Henke D, Doddapaneni H, et al.. Evolutionary dynamics of Respiratory Syncytial Virus in pre-pandemic, pandemic, and post-pandemic periods in Houston, Texas, USA. bioRxiv. 2025.
Avadhanula V, Creighton CJ, Ferlic-Stark L, Nagaraj D, Zhang Y, Sucgang R, et al.. Longitudinal host transcriptional responses to SARS-CoV-2 infection in adults with extremely high viral load. PLoS One. 2025 ;20(1):e0317033.
2024
Henke D, Piedra F-A, Avadhanula V, Doddapaneni H, Muzny DM, Menon VK, et al.. Examining intra-host genetic variation of RSV by short read high-throughput sequencing. bioRxiv. 2024 ;.
Avadhanula V, Agustinho DPaiva, Menon VKumar, Chemaly RF, Shah DP, Qin X, et al.. Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with normal and delayed viral clearance. Virus Evol. 2024 ;10(1):vead086.
Ramani S, Cregeen SJJavornik, Surathu A, Neill FH, Muzny DM, Doddapaneni H, et al.. INTRA- AND INTER-HOST EVOLUTION OF HUMAN NOROVIRUS IN HEALTHY ADULTS. bioRxiv. 2024 ;.
2023
Carter H, Clark J, Carlin LG, Vaughan E, Rajan A, Olvera A, et al.. Functional Genomics of Gastrointestinal Isolated from Patients with Cancer and Diarrhea. bioRxiv. 2023 ;.
Tisza M, Cregeen SJavornik, Avadhanula V, Zhang P, Ayvaz T, Feliz K, et al.. Wastewater sequencing reveals community and variant dynamics of the collective human virome. Nat Commun. 2023 ;14(1):6878.
2022
Menon VK, Okhuysen PC, Chappell CL, Mahmoud M, Mahmoud M, Meng Q, et al.. Fully resolved assembly of Cryptosporidium parvum. Gigascience. 2022 ;11.
Piedra F-A, Henke D, Rajan A, Muzny DM, Doddapaneni H, Menon VK, et al.. Modeling nonsegmented negative-strand RNA virus (NNSV) transcription with ejective polymerase collisions and biased diffusion. Front Mol Biosci. 2022 ;9:1095193.
2021
Criss ZK, Bhasin N, Di Rienzi SC, Rajan A, Deans-Fielder K, Swaminathan G, et al.. Drivers of transcriptional variance in human intestinal epithelial organoids. Physiol Genomics. 2021 ;53(11):486-508.
Doddapaneni H, Cregeen SJavornik, Sucgang R, Meng Q, Qin X, Avadhanula V, et al.. Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals. PLoS One. 2021 ;16(8):e0244468.
2020
Wong MC, Cregeen SJJavornik, Ajami NJ, Petrosino JF. Evidence of recombination in coronaviruses implicating pangolin origins of nCoV-2019. bioRxiv. 2020 ;.